Pairwise sequence alignment Help Icon

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  • Pairwise sequence alignment parameters
    Minimum similarity to keep results (0-100%): Gap creation penalty (1-100):
    Minimum overlap to keep results (0-100%): Gap extension penalty (1-10):
    Minimum overlap for rating reward (0-100%): Word size (1-256):
    Maximum alignments to display (1-1000): Penalty for a nucleotide mismatch:
    Select sorting mode:
    Reward for a nucleotide match:
    Select the reference(s) file(s) to be used for the alignment:
    NameLocationStatus#Match(s) found
    FunCBS E:\BioloMICSBasedCBS\\Collections\Alignments\DB734.80400
    Mycokey E:\BioloMICSBasedCBS\\Collections\Alignments\DB10.17200
    UNITE E:\BioloMICSBasedCBS\\Collections\Alignments\DB17577.95600
    Fusarium E:\BioloMICSBasedCBS\\Alignments\DB41.900  000
    Indoor E:\BioloMICSBasedCBS\\Alignments\DB37.11200
    Morch E:\BioloMICSBasedCBS\\Alignments\DB16.64800
    EFSeq E:\BioloMICSBasedBio\\Alignments\DB7.100
    ITSSeq E:\BioloMICSBasedBio\\Alignments\DB48.83600
    Bipolaris E:\BioloMICSBasedBio\\Alignments\DB4.3400
    CGattii E:\BioloMICSBasedBio\\Alignments\DB5.88800
    CNeof E:\BioloMICSBasedBio\\Alignments\DB4.3200
    PJ E:\BioloMICSBasedBio\\Alignments\DB0.66800
    Scedo E:\BioloMICSBasedBio\\Alignments\DB2.06400  000  000
    Non-redundant GenBank nr0013
Paste sequence to align:

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